+100%-

Geoff’s Narrations are taking a little break

The GIST is a bit different…Scroll a bit down, and you will find it. 🙂

 

Inderjit Singh

Another pulmonologist with an invasive testing machine (David Systrom was the first) enters the fray 🙂

There are a couple of reasons to celebrate seeing Inderjit Singh pump out long COVID studies: he’s a well-published Yale pulmonologist with an invasive exercise machine to play with. A leader in the invasive exercise field, Singh recently published an article, “The casting of invasive cardiopulmonary exercise testing: towards a common goal,” which, among other things, calls for increased use of iCPET to understand exercise intolerance.

Invasive exercise studies are so revealing because their ability to assess both arterial (oxygen rich blood coming from the heart) and venous (depleted blood after it has passed through the muscles) blood means they can tells what happened to the blood as it goes through the muscles during exercise. They can tell us if the muscles picking up sufficient amounts of oxygen or if blood is being lost during transit or is pumped out of the heart in sufficient amounts. Problems with all of these processes have been found in ME/CFS and long COVID.

In 2022, Singh teamed up with David Systrom, Aaron Waxman and others to show that the reduction in energy production found during exercise in long COVID was not due to heart issues but to “peripheral issues” such as blood flows and possible mitochondrial disruption and featured a hyperventilatory breathing pattern.

The gist is that people with ME/CFS and long COVID may be hyperventilating, i.e., breathing more rapid and deeper during exercise than normal in an attempt to get more oxygen into their muscles, and/or they might have autonomic nervous system problems.

The Gist

  • Inderjit Singh

    Another pulmonologist with an invasive testing machine (David Systrom was the first) enters the fray 🙂

    It’s great to see Yale researcher Inderjit Singh with his invasive exercise machine work in the long COVID field.

  • The ability of invasive exercise studies to assess both arterial (oxygen rich blood coming from the heart) and venous (depleted blood after it has passed through the muscles) blood means they can tells what happened to the blood as it goes through the muscles during exercise.
  • This is the first invasive exercise study to use metabolomics (the study of metabolism) in an invasive exercise study. Because metabolites power the Krebs cycle – which provides essential factors to the electron transport chain (which produces ATP) – a breakdown in metabolism could be behind the reduced energy production found in these diseases.
  • The cardiovascular findings were as expected. They found that the muscles of long COVID patients were not getting normal amounts of oxygen (read energy). Because the muscles were not using up oxygen, the levels of oxygen found in the blood after it passed through the muscles was almost ten times higher than that normally found.
  • Peak energy production was reduced and the long COVID patients began to rely on anaerobic energy production at an exercise level comparable to having to walk upstairs – far earlier than in healthy people. The pattern found suggested that mitochondrial problems were to blame.
  • A “net extraction” of nine amino acids from the bloodstream suggested that the muscles of the long COVID patients had become depleted and were turning to the bloodstream to capture amino acids.
  • A large increase in the consumption of purine inosine suggested, once again, that long COVID patients relied more on anaerobic metabolisms and suggested that it’s breakdown products were interfering with the mitochondria.
  • A major takeaway from the study was its finding that both the aerobic and anaerobic energy production pathways in long COVID had been blunted.
  • High levels of succinate suggested that a slowdown of the Krebs cycle might be causing succinate to accumulate in the mitochondria and subsequently get released into the bloodstream.
  • The authors proposed that purine metabolism may serve as a potential novel treatment target but didn’t mention specific treatments.
  • Asking several AI engines which purine inhibitors might be helpful in diseases with exercise intolerance/postexertional malaise uncovered a wide variety of drugs which might be helpful most of which I’d never heard of…Interestingly, the AI engines specifically mentioned ME/CFS, fibromyalgia and long COVID as diseases that might benefit from these drugs. See the blog for those drugs.
  • Suramin – a drug which Dr. Naviaux has championed with regard to ME/CFS – was not among them because it’s a different kind of purine inhibitor. Suramin doesn’t block purine metabolism but blocks purine receptors from activating.

In 2023, in “Post-Acute Sequelae of SARS-CoV-2: More Than Deconditioning,” Singh and another Yale researcher put the brakes on the idea that long COVID was nothing more than deconditioning. Again, in 2023, Singh co-authored a paper comparing the exercise physiology of ME/CFS with long COVID.

Then, in November 2024, Singh’s invasive exercise study, “The metabolic and physiologic impairments underlying long COVID associated exercise intolerance,” employed metabolomics for the first time. Now Singh focuses on metabolism—a critical component of energy production. A lot of focus is on the mitochondria, but without metabolism, the mitochondria don’t have the resources they need to produce ATP.

Metabolic Slant

Before we get to the mitochondria, a long chain of metabolic events has to happen for the mitochondria to function properly. First, carbohydrates, fats, and proteins are metabolized or broken down into glucose, fatty acids, and amino acids, which are then broken down to produce ATP.

We often think of the mitochondria as the electron transport chain where ATP is produced, but it’s the Krebs or citric acid cycle that provides the electron donors the electron transport chain needs to produce ATP. Glucose, fatty acids, and amino acids feed the Krebs cycle, which takes place both in the cell’s cytosol and the mitochondria.

This problem with energy production in ME/CFS and long COVID could be due to metabolic problems that prevent the proper “feeding” of the Krebs cycle. A wonky Krebs cycle would not provide enough electron donors (FADH2, NADH) to the electron transport chain to produce the ATP needed for people with ME/CFS or long COVID to successfully in exercise.

Study Results

Cardiovascular Findings

Not enough oxygen being used by the muscles resulted in higher than normal levels of oxygen in the venous blood leading from the muscles.

Oxygen-Poor Muscles – Once again, we see a reduction in peak VO2 (peak energy production) caused by reduced peak EO2 or peak oxygen consumption; i.e., the mitochondria in the muscles were simply not using up enough oxygen. This is the oxygen extraction problem” that Systrom’s invasive exercise studies have found.

Oxygen-Rich Venous Blood – The reduced oxygen extraction in the muscles showed up as unusually high levels of oxygen in the venous blood. While this study did not have a healthy control group, the levels of oxygen found in the venous blood of the long COVID patients was almost ten times higher (26.5 ± 3.6%) than that normally found in healthy people.

When their peak VO2 plateaued, the muscles of the long COVID patients ran out of oxygen and started relying more on the less effective anaerobic energy production system to provide energy. The authors calculated that this turn to anaerobic energy production probably occurred at an exercise level comparable to having to walk upstairs. The pattern suggested that mitochondrial problems were to blame.

Metabolic Breakdown

Decline graph

Amino acids are usually pulled from the muscles. In the long COVID patients they were pulled from the blood stream as well – suggesting that the muscles have become exhausted.

Muscle Breakdown – The authors simply stated that a “net extraction” of nine amino acids was found and left it at that.   A “net extraction” refers to more amino acids being taken from the bloodstream than released into it. Because amino acids are first taken from the muscles during exercise the net extraction suggested that the muscles of the long COVID patients had turned to the bloodstream in an attempt to renew themselves. If I’m reading it right, though, this finding appears to jive with another key finding in ME/CFS – that amino acids are being preferentially used in these diseases to feed the Krebs cycle.

Anaerobic Metabolism Emphasized—A global metabolic analysis indicating a large increase in the consumption of purine inosine suggested, once again, that long COVID patients relied more on anaerobic metabolism. Inosine is produced when ATP is rapidly broken down. The high consumption of inosine suggested that long COVID patients’ energy production systems maxed out early in the exercise session.

Inosine is catabolized ultimately into purines such as hypoxanthine and uric acid – suggesting that high hypoxanthine levels which have been associated with mitochondrial problems and reduced ATP levels – might be present.

Double Energy Hit – A major takeaway from the study was its finding that both the aerobic and anaerobic energy production pathways in long COVID had been blunted. The authors proposed that the findings “have important implications towards the development of potential pharmacotherapeutic interventions directed towards mitigating early reliance of anaerobic metabolism, which may include shifting, restoring, and/or enhancing mitochondrial oxidative phosphorylation capacity during exercise.

Succinate Sticks Out – A dramatic correlation between succinate in the venous blood and peak energy production was found (VO2 (r = 0.68; p= 0.0008). The authors suggested this could reflect post‐exercise glucose tolerance problems.

Citric acid cycle

Succinate shows up! Look directly up to see where succinate enters the citric acid/Krebs cycle. (Image from Narayanese-Yassine, Mrabet_TotoBaggins; CC 3.0, Wikimedia Commons)

A familiar scenario may be playing out as well. While succinate can enhance ATP production in the electron transport chain, it also plays a role in the Krebs cycle. In hypoxic or low-oxygen conditions—the conditions this study suggests exist in the muscles during exercise—a slowdown of the Krebs cycle could cause succinate to accumulate in the mitochondria and subsequently get released into the bloodstream.

Itaconate Shunt Connection ????

The authors didn’t mention it, but the itaconate shunt inhibits succinate dehydrogenase (SDH), which breaks down succinate – resulting in increased succinate levels.

The two succinate elevations occur in different contexts: one results from metabolic activity during exercise, while the other results from inflammation.  Could inflammation produced by exercise be propping up the succinate levels in ME/CFS patients and contributing to an itaconate shunt? I have no idea. 🙂

Purine Findings Suggest Treatment Options

In the end, the authors proposed that purine metabolism may serve as a potential novel treatment target but didn’t mention specific treatments.

Adenosine-triphosphate-anion-3D-balls

High levels of ATP breakdown can have many consequences (Image from Jynto, CC0, via Wikimedia Commons)

The situation is complex given purines’ role in many processes and the variety of purine inhibitors found. However, purine inhibitors might be able to help situations where exercise intolerance is present and in conditions in which high levels of ATP are broken down. High ATP breakdown occurs when high levels of metabolic stress are present, causing the cell to break down more ATP than it synthesizes and can cause numerous problems.

Under these conditions, the muscle’s ability to relax and produce force is impaired. (Bob Naviaux, some time ago, stated that the low-energy state found in ME/CFS results in contracted, tense muscles.) Increased lactate and H⁺ ion production can cause intracellular acidosis. A predilection for protein misfolding can result in protein aggregations that gum up the works. All in all, high levels of ATP breakdown – which appeared to be happening in these long COVID patients – result in muscle fatigue, cellular stress, and metabolic imbalances.

We also might want to inhibit high levels of purine production because it can produce metabolites such as inosine and hypoxanthine that can be broken down into uric acid. Uric acid—which some ME/CFS/Long COVID doctors test for—enhances oxidative stress (the last thing anyone with these diseases wants more of) and muscle fatigue.

Purine Inhibitors

I asked ChatGPT AI  and Perplexity AI about purine inhibitors and individuals with exercise intolerance or post-exertional malaise. ChatGPT AI suggested that the same kinds of purine inhibitors might be helpful for either condition.

Even though ME/CFS, fibromyalgia, and post-infectious diseases were the most commonly recommended diseases, I had not heard of most of these used to treat these disorders. All the drugs came with some cautions – but most seemed manageable.

Xanthine Oxidase Inhibitors (XOIs)

  • Would work best in individuals with mitochondrial dysfunction or metabolic fatigue by reducing oxidative stress and improving energy efficiency
Drug How It Helps? Who Might Benefit?
Allopurinol Lowers uric acid and oxidative stress, improves nitric oxide bioavailability for better muscle oxygenation and endurance. Individuals with mitochondrial dysfunction, chronic fatigue syndrome (CFS), fibromyalgia, or exercise-induced oxidative stress.
Febuxostat Selectively blocks xanthine oxidase, reducing oxidative stress and ATP depletion without affecting other metabolic pathways.

Purine Synthesis Inhibitors

  • Best for people who need to manage chronic inflammation and immune overactivation, which can impair recovery and energy metabolism.
Drug How It Helps? Who Might Benefit?
Methotrexate (low dose) Reduces chronic inflammation and autoimmune responses that contribute to exercise intolerance. Individuals with autoimmune disorders (RA, lupus, inflammatory myopathies) that impair exercise capacity.
Azathioprine Suppresses excessive immune activation, preventing muscle and joint inflammation that limits exercise. People with chronic fatigue, muscle inflammation, or post-viral syndromes (e.g.,

3. Adenosine Deaminase (ADA) Inhibitors

🔹 Best for: Boosting adenosine levels to enhance blood flow, ATP conservation, and reduce metabolic stress.

Drug How It Helps? Who Might Benefit?
Pentostatin Increases adenosine levels, leading to better vasodilation, oxygen delivery, and mitochondrial function. Individuals with poor circulation, endothelial dysfunction, or metabolic fatigue (e.g., chronic fatigue syndrome, fibromyalgia, or long COVID).

4. Purine Analog Nucleosides

🔹 Best for: Supporting mitochondrial function, ATP balance, and muscle recovery.

Drug How It Helps? Who Might Benefit?
Ribavirin (purine analog) Helps maintain nucleotide balance, preventing excessive ATP depletion. Individuals with chronic fatigue, mitochondrial disorders, or viral-induced exercise intolerance.
Cladribine Influences nucleotide turnover, possibly reducing exercise-related muscle degradation. Endurance athletes or individuals with persistent muscle damage.

Suramin?

Suramin sf

Suramin (Image from Lanulos, Public domain, via Wikimedia Commons)

What about Suramin – the drug that Bob Naviaux has specifically targeted for ME/CFS and other post-infectious diseases?

Suramin is a different kind of purine-inhibitor. Instead of blocking purine metabolism, Suramin blocks purine receptors (P2X and P2Y) from signaling when signs of metabolic breakdown, such as ATP and ADP, are present. Bob Naviaux, if I remember correctly, believes that signals of metabolic stress, such as ATP and ADP, are causing the cells of ME/CFS patients to hunker down and exist in a low-energy state.

Suramin can also reduce the high levels of ATP breakdown (see above) found in ME/CFS, fibromyalgia, and long COVID-19. Overall, Suramin may be able to reduce high levels of ATP breakdown, improve energy efficiency, reduce inflammation, and protect neurons.

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